Codon usage bias of secretory protein in Fusarium oxysporum f. sp. cubense tropical race 4
文献类型： 外文期刊
作者： Fang, Hui 1 ; Li, Min 1 ; Yu, Shenxin 1 ; Sun, Jiaman 4 ; Qin, Zelin 1 ;
作者机构： 1.Guangxi Acad Agr Sci, Agr Sci & Technol Informat Res Inst, Nanning, Peoples R China
2.Guangxi Univ, Med Coll, Nanning, Peoples R China
3.Guangxi Univ, State Key Lab Conservat & Utilizat Subtrop Agrobio, Nanning, Peoples R China
4.Guangxi Acad Agr Sci, Guangxi Crop Genet Improvement & Biotechnol Lab, Nanning, Peoples R China
5.Guangxi Acad Agr Sci, Agr Sci & Technol Informat Res Inst, Daxue Rd 174, Nanning 530007, Guangxi, Peoples R China
关键词： banana wilt; codon usage bias; Fusarium oxysporum f. sp. cubense tropical race 4; secreted protein
期刊名称：JOURNAL OF BASIC MICROBIOLOGY （ 影响因子：3.1； 五年影响因子：3.0 ）
ISSN： 0233-111X
年卷期： 2024 年 64 卷 4 期
页码：
收录情况： SCI
摘要： Banana Fusarium oxysporum f. sp. cubense tropical race 4 (Foc-TR4) is a highly destructive pathogen that infects nearly all major banana cultivars and has a tendency to spread further. Secreted proteins play a crucial role in the process of Fusarium wilt infection in bananas. In this study, we analyzed the codon usage bias (CUB) of the Foc-TR4 classical secretory protein genome for the first time and observed a strong bias toward codons ending with C. We found that 572 out of the 14,543 amino acid sequences in the Foc-TR4 genome exhibited characteristics of classical secretory proteins. The CUB was largely influenced by selection optimization pressure, as indicated by the ENC value and neutral plot analysis. Among the identified codons, such as UCC and CCC, 11 were found to be optimal for Foc-TR4 gene expression. Codons with higher GC content and a C base in the third position showed greater selectivity. The CUB in the secretory proteins encoded by Foc-TR4 provides insights into their evolutionary patterns, contributing to the development and screening of novel and effective antifungal drugs.
- 相关文献
作者其他论文 更多>>
-
Long-Read Draft Genome Sequences of Two Fusarium oxysporum f. sp. cubense Isolates from Banana (Musa spp.)
作者：Sun, Jiaman;Sun, Jiaman;Fu, Gang;Zhang, Jinzhong;Gardiner, Donald M.;van Dam, Peter;Ferguson, Brett J.;Aitken, Elizabeth A. B.;Chen, Andrew
关键词：Fusarium wilt of banana; PacBio HiFi; genome assembly; fungal effectors; pathogenicity;
Fusarium oxysporum species complex; whole-genome phylogenetics -
Differences in homologous and heterologous nucleocytoplasmic interactions of cytoplasmic male sterility lines in Gossypium barbadense
作者：You, Jingyi;Li, Bin;Zhou, Qiong;Zhou, Ruiyang;You, Jingyi;Li, Min;Kong, Xiangjun;Hou, Qingguang;Li, Hongwei
关键词：Cotton; CMS line with homologous cytoplasm and its nucleus; CMS line with heterologous cytoplasm and its nucleus; Mitochondrial genome; Reactive oxygen species; Mitochondrial genome structural variation
-
DualF-PBR: Dual-Extracting Protein Sequence Features for Predicting Plant Resistance Proteins
作者：Fang, Hui;Fang, Hui;Fang, Hui;Chen, Danyang;Tang, Chunyan;Zhong, Cheng;Fang, Hui;Chen, Danyang;Tang, Chunyan;Zhong, Cheng;Fang, Hui;Li, Min
关键词：Feature extraction; Immune system; Protein sequence; Encoding; Neural networks; Amino acids; Data mining; Vectors; Pathogens; Bioinformatics; Plant resistance protein; Prediction; extracting features; disease-resistant breeding
-
QTL mapping and candidate gene analysis of element accumulation in rice grains via genome-wide association study and population genetic analysis
作者：Li, Min;Gao, Mengxue;Huang, Jinmei;Jin, Shaojuan;Lv, Yamei;Wang, Lin;Huang, Tao;Wu, Fengcai;Zhang, Chaopu;Meng, Lijun;Xu, Jianlong;Xu, Jianlong;Xu, Zhijian;Pan, Yinghua;Liang, Yuntao;Liu, Zhixia
关键词：Element accumulation; GWAS; QTL; Divergent region; Gene
-
Spatiotemporal Analysis of Open Biomass Burning in Guangxi Province, China, from 2012 to 2023 Based on VIIRS
作者：He, Xinjie;Huang, Qiting;Xie, Guoxue;Yang, Shaoe;Liang, Cunsui;Qin, Zelin;Yang, Dewei;Yang, Yingpin
关键词：open biomass burning; spatiotemporal variation; driving force; Guangxi province
-
Spatiotemporal Dynamic Relationship of Meteorological Factors and Sugar Content of Sugarcane by Vector Autoregression Model
作者：Zheng, Guojun;Zhu, Guanghu;Wang, Qinlong;Ma, Pengcheng;Zheng, Guojun;Long, Shengfeng;Luo, Ting;Huang, Hairong;Liu, Lu;Fang, Hui;Shen, Yaoyang;Wang, Zeping
关键词：effective cumulative temperature; rainfall; internal connection; statistical analysis; effect
-
YOLOv5s-ECCW: A Lightweight Detection Model for Sugarcane Smut in Natural Environments
作者：Yu, Min;Li, Fengbing;Zhou, Xia;Zhu, Guanghu;Yang, Yunhai;Song, Xiupeng;Zhang, Xiaoqiu;Lei, Jingchao;Huang, Hairong;Huang, Dongmei;Li, Qiufang;Yan, Meixin;Song, Xiupeng;Zhang, Xiaoqiu;Lei, Jingchao;Huang, Hairong;Huang, Dongmei;Li, Qiufang;Yan, Meixin;Song, Xiupeng;Zhang, Xiaoqiu;Lei, Jingchao;Huang, Hairong;Huang, Dongmei;Li, Qiufang;Yan, Meixin;Wang, Zeping;Huang, Qiting;Fang, Hui;Huang, Weihua;Chen, Xiaohang
关键词：sugarcane disease; smut; YOLOv5s; lightweight model; attention mechanism
