Genome Resource of a Hypervirulent Strain C9-3 of Xanthomonas oryzae pv. oryzae Causing Bacterial Blight of Rice
文献类型： 外文期刊
作者： Chen, Xiaolin 1 ; Li, Qili 1 ; Wang, Jinkai 2 ; Zhang, Yu 2 ; Tang, Lihua 1 ; Huang, Suiping 1 ; Mo, Jianyou 1 ; Guo, Tangxun 1 ;
作者机构： 1.Guangxi Acad Agr Sci, Plant Protect Res Inst, Guangxi Key Lab Biol Crop Dis & Insect Pests, Nanning 530007, Guangxi, Peoples R China
2.Guangxi Univ, Coll Life Sci & Technol, State Key Lab Conservat & Utilizat Subtrop Agrobi, Nanning 530004, Guangxi, Peoples R China
关键词： Xanthomonas oryzae pv. oryzae; single molecule real-time (SMRT) sequencing; transcription activator-like effector
期刊名称：PLANT DISEASE （ 影响因子：4.614； 五年影响因子：5.33 ）
ISSN： 0191-2917
年卷期： 2022 年 106 卷 2 期
页码：
收录情况： SCI
摘要： Xanthomonas oryzae pv. oryzae is the causal agent of bacterial blight, one of the most devastating diseases of rice. Here, a hypervirulent strain, C9-3, defeating Xa1, Xa10, xa13, and Xa23 resistance genes, was used to extract genomic DNA for single molecule real-time (SMRT) sequencing. After assembly, the genome consists of a single-circular chromosome with the size of 4,924,298 bp with G+C content of 63.7% and contains 4,715 genes. Annotation and analysis of the TALE genes using a suite of applications named AnnoTALE suggested that 17 transcription activator-like effectors, including 15 typical TALEs and 2 iTALEs/truncTALEs, were encoded in the genome. The approach and genome resource will contribute to the discovery of new virulence effectors and understanding on rice-X. oryzae pv. oryzae interactions.
- 相关文献
作者其他论文 更多>>
-
Impact of residual antibiotics on microbial decomposition of livestock manures in Eutric Regosol: Implications for sustainable nutrient recycling and soil carbon sequestration
作者：Fang, Linfa;Lakshmanan, Prakash;Su, Xiaoxuan;Shi, Yujia;Chen, Zheng;Zhang, Yu;Xiao, Ran;Chen, Xinping;Lakshmanan, Prakash;Wu, Junxi;Lakshmanan, Prakash;Lakshmanan, Prakash;Sun, Wei
关键词：Residual antibiotics; Livestock manure decomposition; Microbial community; Co -occurrence network; Enzyme activities
-
Genome-Enabled Analyses Reveal Roles of Mangrove Homeobox Superfamily in Response to Salinity
作者：Chen, Tingting;Chen, Tingting;Ye, Xiuxu;Wang, Peng;Feng, Erhui;Zhang, Yu;Wang, Peng
关键词：Homeobox superfamily; Rhizophoraceae; Mangrove; Salinity stress
-
Identification and characterization of Colletotrichum species associated with anthracnose disease of passion fruit in Guangxi, China
作者：Zhao, Sifan;Huang, Suiping;Tang, Lihua;Chen, Xiaolin;Zhang, Yu;Guo, Tangxun;Li, Qili;Zhao, Sifan;Li, Wei;Sun, Wenxiu;Hsiang, Tom
关键词：
Colletotrichum ; morphological characteristics; passion fruit; pathogenicity; phylogenetic analysis; analyse phylog & eacute;n & eacute;tique; caract & eacute;ristiques morphologiques; fruit de la passion; pathog & eacute;nicit & eacute; -
Metabolome and transcriptome analysis reveal the pigments biosynthesis pathways in different color fruit peels of Clausena lansium L. Skeels
作者：Zhao, Zhichang;Luo, Ruixiong;Yu, Huaping;Pang, Yali;Wang, Jian;Gao, Aiping;Adjei, Mark Owusu;Ma, Jun;Zhang, Yu
关键词：
Clausena lansium L.Skeels ; fruits peels; anthocyanins; flavonoids; fruit peel color -
Comparative and Phylogenetic Analysis of Complete Chloroplast Genomes of Five Mangifera Species
作者：Tang, Yujuan;Yang, Xiangyan;Luo, Shixing;Huang, Guodi;Zhang, Yu;Zhao, Ying;Li, Riwang;Guo, Limei;Ran, Mengyang;Tang, Yujuan;Yang, Xiangyan;Luo, Shixing;Huang, Guodi;Zhang, Yu;Zhao, Ying;Li, Riwang;Guo, Limei;Ran, Mengyang;Tang, Yujuan;Yang, Xiangyan;Luo, Shixing;Huang, Guodi;Zhang, Yu;Zhao, Ying;Li, Riwang;Guo, Limei;Ran, Mengyang;Gao, Aiping;Huang, Jianfeng
关键词：Mangifera; chloroplast genome; Illumina; polymorphism analysis; phylogenetic analysis
-
Comparative Genomics and Phylogenetics of Chloroplasts Reveal Lower Rates of Genetic Variation in Mango (Mangifera)
作者：Li, Chuanning;Wei, Zuan;Gao, Yuzu;Yisilam, Gulbar;Zheng, Enting;Jiao, Fangfang;Chu, Zhenzhou;Liao, Caihua;Lei, Xuefen;Nong, Jinyu;Liang, Yonghai;Lin, Juanyan;Wei, Yingman;Wang, Qiuyan;Tian, Xinmin;Li, Chuanning;Wei, Zuan;Gao, Yuzu;Yisilam, Gulbar;Zheng, Enting;Jiao, Fangfang;Chu, Zhenzhou;Su, Ying;Liao, Caihua;Lei, Xuefen;Nong, Jinyu;Liang, Yonghai;Lin, Juanyan;Wei, Yingman;Wang, Qiuyan;Tian, Xinmin;Li, Chuanning;Wei, Zuan;Gao, Yuzu;Yisilam, Gulbar;Zheng, Enting;Jiao, Fangfang;Chu, Zhenzhou;Liao, Caihua;Lei, Xuefen;Nong, Jinyu;Liang, Yonghai;Lin, Juanyan;Wei, Yingman;Wang, Qiuyan;Tian, Xinmin;Huang, Jianfeng;Su, Ying;Yisilam, Gulbar;Jiao, Fangfang;Chu, Zhenzhou;Su, Ying;Zhang, Yu
关键词：chloroplast genome; comparative genomics; genetic variation; mango; phylogenetic
-
Mango pangenome reveals dramatic impacts of reference bias on population genomic analyses
作者：Ahmad, Bilal;Su, Ying;Hao, Yani;Razzaq, Tayyaba;Arshad, Rida;Zhang, Yi;Zhang, Yingchun;Wang, Xingyi;Huang, Guizhou;Su, Xiangnian;Hou, Ting;Yang, Xuanwen;Xu, Qi;Xu, Xiaodong;Peng, Yanling;Xiao, Hua;Zhou, Yongfeng;Su, Ying;Chu, Zhenzhou;Tian, Xinmin;Hao, Yani;Wang, Xingyi;Li, Chaochao;Jin, Zhongxin;Xu, Xiaodong;Bi, Guiqi;Chen, Chengjie;Huang, Jianfeng;Zhou, Yongfeng;Li, Chuanning;Chu, Zhenzhou;Wang, Qiuyan;Tian, Xinmin;Li, Chuanning;Chu, Zhenzhou;Wang, Qiuyan;Tian, Xinmin;Zhang, Yu;Chen, Yeyuan
关键词：
