The rearrangement features and phylogenetic signals of mitochondrial genomes of gall midge subfamily Cecidomyiinae (Diptera: Cecidomyiidae) with first complete mitogenome of an economically important mango gall midge pest, Procontarina fructiculi from Guangxi, China
文献类型： 外文期刊
作者： Ji, Yu 1 ; Wei, De-Wei 2 ; Ma, Ning-Bo 1 ; Xu, Chen 1 ; Li, Yan-Fei 4 ; Wang, Hao 5 ; Bu, Wen-Jun 4 ; Jiao, Ke-Long 1 ;
作者机构： 1.Tianjin Agr Univ, Dept Plant Protect, Coll Hort & Landscape, 22 Jinjing Rd, Tianjin 300392, Peoples R China
2.Guangxi Acad Agr Sci, Plant Protect Res Inst, Key Lab Green Prevent & Control Fruits & Vegetable, Guangxi Key Lab Biol Crop Dis & Insect Pests,Minis, Nanning, Peoples R China
3.Yunnan Univ, Sch Ecol & Environm Sci, Kunming, Yunnan, Peoples R China
4.Nankai Univ, Inst Entomol, Coll Life Sci, Tianjin, Peoples R China
5.Tianjin Renai Coll, Sch Energy & Chem Engn, Tianjin, Peoples R China
关键词： Cecidomyiinae; gall midge; Procontarinia fructiculi; mitogenome; rearrangement
期刊名称：ORIENTAL INSECTS （ 影响因子：0.5； 五年影响因子：0.4 ）
ISSN： 0030-5316
年卷期： 2024 年
页码：
收录情况： SCI
摘要： In this study, we obtained the first complete mitochondrial genome of Procontarina fructiculi, an important mango gall midge pest from Guangxi, China. The mitogenome of P. fructiculi was sequenced and annotated for the first time, and compared with all the published and annotated data of Cecidomyiidae species to summarise the gall midge organisation and rearrangement features of mitochondrial genomes with phylogenetic analysis. The comparison of gall midge mitochondrial genome structure shows that the rearrangement of the mitochondrial gene structure is very common, and most rearrangements are embodied in rearrangement in the order of tRNAs. The phylogenetic results based on the maximum likelihood (ML) and Bayesian inference (BI) methods both highly supported the monophyly of Cecidomyiinae. Cecidomyiinae can be divided into two distinct clades (except Cecidomyiidae sp. 3): A: (Mayetiola destructor + Rhopalomyia pomum) and B: (Asphondylia rosetta + ((Procontarinia fructiculi + Orseolia oryzae) + ((Cecidomyiidae sp. 1 + Aphidoletes aphidimyza) + Cecidomyiidae sp. 2))). Based on the above results, some phylogenetic signals in rearrangement have been found in the mitochondrial genome structure of Cecidomyiinae for the first time.
- 相关文献
作者其他论文 更多>>
-
Transcriptome Analysis Reveals the Pivotal Genes and Regulation Pathways Under Cold Stress and Identifies SbERF027, an AP2/ERF Gene That Confers Cold Tolerance in Sorghum
作者：Lou, Qijin;Wang, Peifeng;Xu, Chen;Chen, Shengyu;Yu, Hao;Zhang, Rui;Tian, Guangling;Hao, Di;Ke, Xianshi;Yu, Shuai;Zhou, Jiajia;Zhao, Yao;Ye, Chao;Guo, Jiyuan;Zhang, Haiyan;Chen, Mo;Liu, Xingbei;Yu, Miao;Xie, Zhigan
关键词：AP2/ERF; cold tolerance; RNA-seq; seedlings; sorghum
-
First Report of Brown Stripe Disease Caused by Paracidovorax oryzae on Rice in Guangxi (China)
作者：Huang, Jingjing;Wang, Hao;Zeng, Yingyu;Guo, Weiyuan;Yang, Shanshan;Zhang, Xiaoxiao;Li, Fuxing;Pan, Lingling;Shan, Bin;Fei, Nuoya
关键词：brown stripe disease; Paracidovorax oryzae; rice
-
Contarinia maculipennis, a worldwide invasive flower and vegetable pest possessing the particularities of rearrangement and tRNA secondary structures of mitogenome: A potential key to revealing its extensive host radiation
作者：Ma, Ning-Bo;Dong, Xiu-Fang;Ji, Yu;Yue, Zheng-Hao;Jiao, Ke-Long;Jin, Xin;Wei, De-Wei;Li, Yan-Fei;Bu, Wen-Jun
关键词：Invasive pest; Cecidomyiidae; Gall midge; Contarinia maculipennis; Mitogenome; Rearrangement; tRNA secondary structures
-
Large-scale genomic and phenomic analyses of modern cultivars empower future rice breeding design
作者：Ma, Xiaoding;Wang, Hao;Yan, Shen;Zhou, Chuanqing;Ji, Zhiyuan;Sun, Xianjun;Zhou, Yongli;Zhou, Peng;Cui, Di;Han, Bing;He, Qiang;Fang, Wei;Han, Longzhi;Zhou, Chuanqing;Jing, Xin;Zhou, Kunneng;Zhang, Qiang;Li, Maomao;Yang, Yaolong;Li, Danting;Song, Peng;Tang, Cuifeng;Geng, Leiyue;Sun, Jianchang
关键词：modern rice cultivars; genomic bases; rice-growing regions; breeding design
-
DeepCCR: large-scale genomics-based deep learning method for improving rice breeding
作者：Ma, Xiaoding;Wang, Hao;Han, Bing;Cui, Di;Yan, Shen;Han, Longzhi;Wu, Shengyang;Liu, Jin;Zhang, Qiang;Xia, Xiuzhong;Song, Peng;Tang, Cuifeng;Geng, Leiyue;Yang, Yaolong;Zhou, Kunneng
关键词：genomic selection; convolutional neural network; Chinese cultivated rice population; yield trait
-
An adaptive bivariate kernel smoothing method for determining instars of Austrosimulium tillyardianum (Diptera: Simuliidae) larvae
作者：Gao, Xu-Yuan;Long, Xiu-Zhen;Zeng, Xian-Ru;Liu, Ji-Min;Wei, De-Wei;Yu, Yong-Hao;Gao, Xu-Yuan
关键词：Austrosimulium tillyardianum; instar determination method; adaptive bivariate kernel smoothing estimation; instar identification
-
A new species of Procontarinia (Diptera: Cecidomyiidae) damaging fruit of mango, Mangifera indica (Anacardiaceae), in China
作者：Wang, Hao;Wang, Yuan-Hong;Wei, De-Wei;Mo, Jian-You;Bu, Wen-Jun;Kolesik, Peter
关键词：gall midge; insect pest; mango fruit; South East Asia
