Genome-Wide Identification and Expression Analysis of m6A Writers, Erasers, and Readers in Litchi (Litchi chinensis Sonn.)
文献类型： 外文期刊
作者： Tang, Liwen 1 ; Xue, Jiali 1 ; Ren, Xingyu 1 ; Zhang, Yue 1 ; Du, Liqing 3 ; Ding, Feng 4 ; Zhou, Kaibing 1 ; Ma, Wuqiang 1 ;
作者机构： 1.Sanya Nanfan Res Inst Hainan Univ, Sanya 572025, Peoples R China
2.Hort Coll, Sch Hort, Key Lab Qual Regulat Trop Hort Crops Hainan Prov, Haikou 570228, Peoples R China
3.Chinese Acad Trop Agr Sci, Minist Agr & Rural Affairs, Key Lab Trop Fruit Biol, South Subtrop Crops Res Inst, Zhanjiang 524091, Peoples R China
4.Guangxi Acad Agr Sci, Guangxi Crop Genet Improvement & Biotechnol Key La, Nanning 530007, Peoples R China
关键词： litchi; m6A modification; writers; erasers; readers; expression analysis; fruit coloration; fruit abscission
期刊名称：GENES （ 影响因子：4.141； 五年影响因子：4.474 ）
ISSN：
年卷期： 2022 年 13 卷 12 期
页码：
收录情况： SCI
摘要： N6-methyladenosine (m6A) RNA modification is the most prevalent type of RNA methylation and plays a pivotal role in the development of plants. However, knowledge of the m6A modification in litchi remains limited. In this study, a complete analysis of m6A writers, erasers, and readers in litchi was performed and 31 litchi m6A regulatory genes were identified in total, including 7 m6A writers, 12 m6A erases, and 12 readers. Phylogeny analysis showed that all three of the kinds of litchi m6A regulatory proteins could be divided into three groups; domains and motifs exhibited similar patterns in the same group. MiRNA target site prediction showed that 77 miRNA target sites were located in 25 (80.6%) litchi m6A regulatory genes. Cis-elements analysis exhibited that litchi m6A regulatory genes were mainly responsive to light and plant hormones, followed by environmental stress and plant development. Expression analysis revealed litchi m6A regulatory genes might play an important role during the peel coloration and fruit abscission of litchi. This study provided valuable and expectable information of litchi m6A regulatory genes and their potential epigenetic regulation mechanism in litchi.
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