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Fine mapping and identification of the candidate gene BFS for fruit shape in wax gourd (Benincasa hispida)

文献类型： 外文期刊

作者： Cheng, Zhikui 1 ; Liu, Zhengguo 1 ; Xu, Yuanchao 2 ; Ma, Lianlian 1 ; Chen, Jieying 1 ; Gou, Jiquan 1 ; Su, Liwen 1 ; Wu, 1 ;

作者机构： 1.Guangxi Univ, Coll Agr, Nanning 530004, Guangxi, Peoples R China

2.Chinese Acad Agr Sci, Inst Vegetables & Flowers, SinoDutch Joint Lab Hort Genom, Beijing 100081, Peoples R China

3.Guangxi Acad Agr Sci, Inst Vegetables, Nanning 530004, Guangxi, Peoples R China

4.Guangxi Univ, Inst New Rural Dev, Nanning 530004, Guangxi, Peoples R China

期刊名称：THEORETICAL AND APPLIED GENETICS （ 影响因子：5.699； 五年影响因子：5.565 ）

ISSN： 0040-5752

年卷期： 2021 年 134 卷 12 期

页码：

收录情况： SCI

摘要： Key message Non-synonymous mutations in the BFS gene, which encodes the IQD protein, are responsible for the shape of wax gourd fruits. Fruit shape is an important agronomic trait in wax gourds. Therefore, in this study, we employed bulked segregant analysis (BSA) to identify a candidate gene for fruit shape in wax gourds within F-2 populations derived by crossing GX-71 (long cylindrical fruit, fruit shape index = 4.56) and MY-1 (round fruit, fruit shape index = 1.06) genotypes. According to BSA, the candidate gene is located in the 17.18 Mb region on chromosome 2. Meanwhile, kompetitive allele-specific PCR (KASP) markers were used to reduce it to a 19.6 Kb region. Only one gene was present within the corresponding region of the reference genome, namely Bch02G016830 (designated BFS). Subsequently, BFS was sequenced in six wax gourd varieties with different fruit shapes. Sequence analysis revealed two non-synonymous mutations in the round wax gourd and one non-synonymous mutation in the cylindrical wax gourd. Quantitative real-time PCR (qRT-PCR) analysis further showed that the expression of BFS in round fruits was significantly higher than in long cylindrical fruits at the ovary formation stage. Therefore, BFS is a candidate gene for determination wax gourd shape. The predicted protein encoded by the BFS gene belongs to the IQ67-domain protein family, which have the structural characteristics of scaffold proteins and coordinate Ca2+ CaM signaling from the membrane to the nucleus. Ultimately, two derived cleaved amplified polymorphic sequence (dCAPS) markers were developed to facilitate marker-assisted selection for wax gourds breeding.

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