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Integrated transcriptomic and proteomic analyses of two sugarcane (Saccharum officinarum Linn.) varieties differing in their lodging tolerance

文献类型： 外文期刊

作者： Li, Xiang 1 ; Li, Yijie 2 ; Wei, Ailin 4 ; Wang, Zeping 2 ; Huang, Hairong 2 ; Huang, Quyan 2 ; Yang, Litao 2 ; Gao, Yijing 2 ; Zhu, Guanghu 6 ; Liu, Qihuai 6 ; Li, Yangrui 2 ; Wei, Shaolong 1 ; Wei, Debin 4 ;

作者机构： 1.Guangxi Subtrop Crops Res Inst, Nanning 530002, Peoples R China

2.Guangxi Acad Agr Sci, Nanning 530007, Peoples R China

3.Minist Agr & Rural Affairs, Guangxi Key Lab Sugarcane Genet Improvement, Key Lab Sugarcane Biotechnol & Genet Improvement, Sugarcane Res Inst,Guangxi Acad Agr Sci, Nanning 530007, Peoples R China

4.Baise Agr Sci Res Inst, Baise 533612, Peoples R China

5.Guangxi Acad Agr Sci, Biotechnol Res Inst, Nanning 530007, Peoples R China

6.Ctr Appl Math Guangxi GUET, Guilin 541004, Peoples R China

关键词： Transcriptomic and proteomic analyses; Lignification; Lodging tolerance

期刊名称：BMC PLANT BIOLOGY （ 影响因子：5.3； 五年影响因子：5.9 ）

ISSN： 1471-2229

年卷期： 2023 年 23 卷 1 期

页码：

收录情况： SCI

摘要： Background Lodging seriously affects sugarcane stem growth and sugar accumulation, reduces sugarcane yield and sucrose content, and impedes mechanization. However, the molecular mechanisms underlying sugarcane lodging tolerance remain unclear. In this study, comprehensive transcriptomic and proteomic analyses were performed to explore the differential genetic regulatory mechanisms between upright (GT42) and lodged (GF98-296) sugarcane varieties.Results The stain test showed that GT42 had more lignin and vascular bundles in the stem than GF98-296. The gene expression analysis revealed that the genes that were differentially expressed between the two varieties were mainly involved in the phenylpropanoid pathway at the growth stage. The protein expression analysis indicated that the proteins that were differentially expressed between the two varieties were related to the synthesis of secondary metabolites, the process of endocytosis, and the formation of aminoacyl-tRNA. Time-series analysis revealed variations in differential gene expression patterns between the two varieties, whereas significant protein expression trends in the two varieties were largely consistent, except for one profile. The expression of CYP84A, 4CL, and CAD from the key phenylpropanoid biosynthetic pathway was enhanced in GT42 at stage 2 but suppressed in GF98-296 at the growth stage. Furthermore, the expression of SDT1 in the nicotinate and nicotinamide metabolism was enhanced in GT42 cells but suppressed in GF98-296 cells at the growth stage.Conclusion Our findings provide reference data for mining lodging tolerance-related genes that are expected to facilitate the selective breeding of sugarcane varieties with excellent lodging tolerance.

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