Complete genome analysis of sugarcane root associated endophytic diazotroph Pseudomonas aeruginosa DJ06 revealing versatile molecular mechanism involved in sugarcane development
文献类型: 外文期刊
作者: Guo, Dao-Jun 1 ; Singh, Pratiksha 2 ; Yang, Bin 1 ; Singh, Rajesh Kumar 2 ; Verma, Krishan K. 2 ; Sharma, Anjney 2 ; Khan, Qaisar 3 ; Qin, Ying 3 ; Chen, Ting-Su 4 ; Song, Xiu-Peng 2 ; Zhang, Bao-Qing 2 ; Li, Dong-Ping 4 ; Li, Yang-Rui 2 ;
作者机构: 1.Hexi Univ, Coll Life Sci & Engn, Zhangye, Gansu, Peoples R China
2.Guangxi Acad Agr Sci, Sugarcane Res Inst, Key Lab Sugarcane Biotechnol & Genet Improvement G, Guangxi Key Lab Sugarcane Genet Improvement,Minist, Nanning, Guangxi, Peoples R China
3.Guangxi Univ, Coll Agr, Nanning, Guangxi, Peoples R China
4.Guangxi Acad Agr Sci, Microbiol Inst, Nanning, Guangxi, Peoples R China
关键词: Pseudomonas aeruginosa; endophyte; complete genome; PGPB; root colonization; sugarcane
期刊名称:FRONTIERS IN MICROBIOLOGY ( 影响因子:5.2; 五年影响因子:6.2 )
ISSN:
年卷期: 2023 年 14 卷
页码:
收录情况: SCI
摘要: Sugarcane is an important sugar and bioenergy source and a significant component of the economy in various countries in arid and semiarid. It requires more synthetic fertilizers and fungicides during growth and development. However, the excess use of synthetic fertilizers and fungicides causes environmental pollution and affects cane quality and productivity. Plant growth-promoting bacteria (PGPB) indirectly or directly promote plant growth in various ways. In this study, 22 PGPB strains were isolated from the roots of the sugarcane variety GT42. After screening of plant growth-promoting (PGP) traits, it was found that the DJ06 strain had the most potent PGP activity, which was identified as Pseudomonas aeruginosa by 16S rRNA gene sequencing. Scanning electron microscopy (SEM) and green fluorescent protein (GFP) labeling technology confirmed that the DJ06 strain successfully colonized sugarcane tissues. The complete genome sequencing of the DJ06 strain was performed using Nanopore and Illumina sequencing platforms. The results showed that the DJ06 strain genome size was 64,90,034 bp with a G+C content of 66.34%, including 5,912 protein-coding genes (CDSs) and 12 rRNA genes. A series of genes related to plant growth promotion was observed, such as nitrogen fixation, ammonia assimilation, siderophore, 1-aminocyclopropane-1-carboxylic acid (ACC), deaminase, indole-3-acetic acid (IAA) production, auxin biosynthesis, phosphate metabolism, hydrolase, biocontrol, and tolerance to abiotic stresses. In addition, the effect of the DJ06 strain was also evaluated by inoculation in two sugarcane varieties GT11 and B8. The length of the plant was increased significantly by 32.43 and 12.66% and fresh weight by 89.87 and 135.71% in sugarcane GT11 and B8 at 60 days after inoculation. The photosynthetic leaf gas exchange also increased significantly compared with the control plants. The content of indole-3-acetic acid (IAA) was enhanced and gibberellins (GA) and abscisic acid (ABA) were reduced in response to inoculation of the DJ06 strain as compared with control in two sugarcane varieties. The enzymatic activities of oxidative, nitrogen metabolism, and hydrolases were also changed dramatically in both sugarcane varieties with inoculation of the DJ06 strain. These findings provide better insights into the interactive action mechanisms of the P. aeruginosa DJ06 strain and sugarcane plant development.
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