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Characteristics, Comparative Analysis, and Phylogenetic Relationships of Chloroplast Genomes of Cultivars and Wild Relatives of Eggplant (Solanum melongena)

文献类型： 外文期刊

作者： Yang, Qihong 1 ; Li, Ye 2 ; Cai, Liangyu 1 ; Gan, Guiyun 1 ; Wang, Peng 1 ; Li, Weiliu 1 ; Li, Wenjia 1 ; Jiang, Yaqin 1 ; Li, Dandan 1 ; Wang, Mila 1 ; Xiong, Cheng 4 ; Chen, Riyuan 1 ; Wang, Yikui 1 ;

作者机构： 1.Guangxi Acad Agr Sci, Inst Vegetable Res, Nanning 530003, Peoples R China

2.Habin Acad Agr Sci, Harbin 150008, Peoples R China

3.South China Agr Univ, Coll Hort, Guangzhou 510642, Peoples R China

4.Minist Educ, Engn Res Ctr Hort Crop Germplasm Creat & New Varie, Changsha 410128, Peoples R China

关键词： Solanum melongena; chloroplast genome; DNA barcode; comparative analysis; phylogenetic; interspecific hybridization

期刊名称：CURRENT ISSUES IN MOLECULAR BIOLOGY （ 影响因子：3.1； 五年影响因子：3.3 ）

ISSN： 1467-3037

年卷期： 2023 年 45 卷 4 期

页码：

收录情况： SCI

摘要： The eggplant (Solanum melongena) is a popular vegetable around the world. However, the origin and evolution of eggplant has long been considered complex and unclear, which has become the barrier to improvements in eggplant breeding. Sequencing and comparative analyses of 13 complete chloroplast (cp) genomes of seven Solanum species were performed. Genome sizes were between 154,942 and 156,004 bp, the smallest genome was from S. torvum and the largest from S. macrocapon. Thirteen cp genomes showed highly conserved sequences and GC contents, particularly at the subgenus level. All genes in the 13 genomes were annotated. The cp genomes in this study comprised 130 genes (i.e., 80 protein-coding genes, 8 rRNA genes, and 42 tRNA genes), apart from S. sisymbriifolium, which had 129 (79 protein-coding genes, 8 rRNA genes, and 42 tRNA genes.). The rps16 was absent from the cp genome of S. sisymbriifolium, resulting in a nonsense mutation. Twelve hotspot regions of the cp genome were identified, which showed a series of sequence variations and differed significantly in the inverted repeat/single-copy boundary regions. Furthermore, phylogenetic analysis was conducted using 46 cp genomic sequences to determine interspecific genetic and phylogenetic relationships in Solanum species. All species formed two branches, one of which contained all cultivars of the subgenus Leptostemonum. The cp genome data and phylogenetic analysis provides molecular evidence revealing the origin and evolutionary relationships of S. melongena and its wild relatives. Our findings suggest precise intra- and interspecies relatedness within the subgenus Leptostemonum, which has positive implications for work on improvements in eggplant breeding, particularly in producing heterosis, expanding the source of species variation, and breeding new varieties.

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